Project output
DiSSCo Flanders publication output
Publications
Implementation Experience Report for the Developing Latimer Core Standard: The DiSSCo Flanders use-case
Breugelmans L. & Trekels M. 2023. Implementation Experience Report for the Developing Latimer Core Standard: The DiSSCo Flanders use-case. Biodiversity Information Science and Standards 7: e113766. https://doi.org/10.3897/biss.7.113766
Chandrasekar K.K.T., Milleville K. & Verstockt S. 2021. Species detection and segmentation of multi-specimen historical herbaria. Biodiversity Information Science and Standards 5: e74060. https://doi.org/10.3897/biss.5.74060
Chandrasekar T. & Kumar K. 2022. Meta data enrichment for improving the quality and usability of botanical collections. PhD Thesis, Ghent University. http://hdl.handle.net/1854/LU-8760438
Corrales, C., Forrest, L., Harris, D., Dickie, J., Fulcher, T., Paton, A., Haston, E., Haring, E., Vandelook, F., Thines, M., Kahila, G., Vondráček, D., von Rintelen, T., Emery, A., Krukenhauser, L., Martín, M. P., Sanmartín, I., Ruiz, Y., Diéguez-Uribeondo, J., … Astrin, J. J. (2023). Field Collection. In C. Carolina, & J. J. Astrin (Eds.), Biodiversity Biobanking – a Handbook on Protocols and Practices (pp. 22-77). (Advanced Books). Pensoft Publishers. https://doi.org/10.3897/ab.e101876
Corrales, C., Leliaert, F., & Astrin, J. J. (2023). Biobank Management. In C. Carolina, & J. J. Astrin (Eds.), Biodiversity Biobanking – a Handbook on Protocols and Practices (pp. 13-17). (Advanced Books). Pensoft Publishers. https://doi.org/10.3897/ab.e101876
Corrales, C., Leliaert, F., Forrest, L., Fulcher, T., Poczai, P., Haring, E., Krukenhauser, L., Thines, M., Mulcahy, D., Mackenzie-Dodds, J., Martín, M. P., Sanmartín, I., Ruiz, Y., Diéguez-Uribeondo, J., Vondráček, D., Poczai, P., & Astrin, J. J. (2023). DNA. In C. Carolina, & J. J. Astrin (Eds.), Biodiversity Biobanking – a Handbook on Protocols and Practices (pp. 126-136). (Advanced Books). Pensoft Publishers. https://doi.org/10.3897/ab.e101876
Corrales, C., Leliaert, F., Forrest, L., Martín, M. P., Vandelook, F., Thines, M., Poczai, P., Kahila, G., Mulcahy, D., Haring, E., Krukenhauser, L., Mackenzie-Dodds, J., Nagel, M., Ballesteros, D., & Astrin, J. J. (2023). Cryopreservation. In C. Carolina, & J. J. Astrin (Eds.), Biodiversity Biobanking – a Handbook on Protocols and Practices (pp. 97-113). (Advanced Books). Pensoft Publishers. https://doi.org/10.3897/ab.e101876
M., & Astrin, J. J. (2023). Genomic Characterisation. In C. Carolina, & J. J. Astrin (Eds.), Biodiversity Biobanking – a Handbook on Protocols and Practices (pp. 145-150). (Advanced Books). Pensoft Publishers. https://doi.org/10.3897/ab.e101876
Corrales, C., Poczai, P., Paton, A., Forrest, L., Dickie, J., Harris, D., Vandelook, F., Martín, M. P., Mulcahy, D., Mackenzie-Dodds, J., & Astrin, J. J. (2023). Retrieval from Preservation and Viability Assessments. In C. Carolina, & J. J. Astrin (Eds.), Biodiversity Biobanking – a Handbook on Protocols and Practices (pp. 116-125). https://doi.org/10.3897/ab.e101876
Corrales, C., Thines, M., Forrest, L., Vandelook, F., Mackenzie-Dodds, J., Haston, E., Martín, M. P., Nagel, M., Ballesteros, D., & Astrin, J. J. (2023). Culture Preservation and Storage Methods. In C. Carolina, & J. J. Astrin (Eds.), Biodiversity Biobanking – a Handbook on Protocols and Practices (pp. 76-96). https://doi.org/10.3897/ab.e101876
De Smedt S. & Bogaerts A. 2022. Meise Botanic Garden Herbarium Sheet Workflow. version 1.0. Available at: https://dissco.github.io/HerbariumSheets/MeiseBGHerbariumSheets.html
De Smedt S. & Bogaerts A. 2022. DiSSCo Digitisation Guide: Pre-Digitisation Checklist. v.1.1. Available at: https://dissco.github.io/Digitisation/PreDigCuration/PreDigCuration.html
Ten lessons learned from the mass digitisation of a herbarium collection
De Smedt S., Bogaerts A., De Meeter N., Dillen M., Engledow H., Van Wambeke P., Leliaert F., Groom Q. 2024. Ten lessons learned from the mass digitisation of a herbarium collection. Submitted.
Calculating the Digitization Level of Specimens with the Minimum Information about a Digital Specimen (MIDS) Standard
Dillen M., Huybrechts P., Groom Q. & Delgat L. 2022. Calculating the Digitization Level of Specimens with the Minimum Information about a Digital Specimen (MIDS) Standard. Biodiversity Information Science and Standards 6: e90879. https://doi.org/10.3897/biss.6.90879
The Meise Botanic Garden Herbarium Data Management Plan
Dillen M., Abraham L., Bogaerts A., De Smedt S., Engledow H., Leliaert F., Trekels M., Dessein S., Groom Q. The Meise Botanic Garden Herbarium Data Management Plan. Submitted.
Engledow H., Bogaerts A., De Smedt S. & Tack W. 2023. Planning the migration to a new database: implications for the collections of Meise Botanic Garden. Biodiversity Information Science and Standards 7: e111422. https://doi.org/10.3897/biss.7.111422
Groom Q., Bräuchler C., Cubey R.W., Dillen M., Huybrechts P., Kearney N., Klazenga N., Leachman S., Paul D.L., Rogers H., & others 2022. The disambiguation of people names in biological collections. Biodiversity Data Journal 10: e86089. https://doi.org/10.3897%2FBDJ.10.e86089
Groom Q., Dillen M., Addink W., Ariño A.H., Bölling C., Bonnet P., Cecchi L., Ellwood E.R., Figueira R., Gagnier P.-Y., & others 2023. Envisaging a global infrastructure to exploit the potential of digitised collections. Biodiversity Data Journal 11: e109439. https://doi.org/10.3897/BDJ.11.e109439
Groom Q., Meeus S., Janssens S.B., Leus L. & Hoste I. 2021. Hybridization of Oxalis corniculata and O. dillenii in their non-native range. PhytoKeys 178: 17-30. https://doi.org/10.3897/phytokeys.178.61031
Haston E., Dillen M., Leeflang S., Addink W., Weiland C., Triebel D., Rindal E., Penzlin A., Walcott R., Humphries J., et al. 2023. Mapping across Standards to Calculate the MIDS Level of Digitisation of Natural Science Collections. Biodiversity Information Science and Standards 7: e112672. https://doi.org/10.3897/biss.7.112672
Huybrechts P., Trekels M. & Groom Q. 2021. Estimating the Completeness of Preserved Collections in Representing Global Biodiversity. Biodiversity Information Science and Standards 5: e74032. https://doi.org/10.3897/biss.5.74032
How Much of Biodiversity is Represented in Collections: A big data workflow of aggregated occurrence data
Huybrechts P., Trekels M. & Groom Q. 2022. How Much of Biodiversity is Represented in Collections: A big data workflow of aggregated occurrence data. Biodiversity Information Science and Standards 6: e94279. https://doi.org/10.3897/biss.6.94279
Enabling botanical collaboration through digitization of the Meise Botanic Garden and Central African herbaria
Leliaert F., Bogaerts A., de Meeter N., Dessein S., Dillen M., Engledow H., Groom Q., Lanata F., Mergen P., Ntore S., et al. 2023. Enabling botanical collaboration through digitization of the Meise Botanic Garden and Central African herbaria. Proceedings of the Royal Academy for Overseas Sciences (accepted) preprint: https://hal.science/hal-04373221
Origins and key contributors to the economic botany collection of Meise Botanic Garden
Leyman V. & Leliaert F. Origins and key contributors to the economic botany collection of Meise Botanic Garden. Proceedings of the Royal Academy for Overseas Sciences (submitted).
Meeus S., Addink W., Agosti D., Arvanitidis C., Balech B., Dillen M., Dimitrova M., González-Aranda J.M., Holetschek J., Islam S., et al. 2022. Recommendations for interoperability among infrastructures. Research Ideas and Outcomes 8: e96180. https://doi.org/10.3897/rio.8.e96180
Meeus S., August T., Trekels M., Reyserhove L. & Groom Q. 2021. Network analysis of specimen co-collection. BioHackrXiv. https://doi.org/10.37044/osf.io/4ahng
Mergen P., Meeus S., Leliaert F. 2023. FAIR but not Necessarily Open: Sensitive data in the domain of biodiversity. Biodiversity Information Science and Standards 7: e112296. https://doi.org/10.3897/biss.7.112296
Towards Sustainable Funding Models for the European Open Science Cloud: Financial Sustainability Task Force Progress report
Roi, A., Robertson , D., Hacque-Cosson, F., Versic Ilijasic, I., Meijer, J., Klemeier, J., Kaczmirek, L., Mazon , M. R., De Giacomo, O., Mergen, P., Belsø, R., & Muscella, S. 2022. Towards Sustainable Funding Models for the European Open Science Cloud: Financial Sustainability Task Force Progress report. EOSC Association, AISBL. https://www.eosc.eu/sites/default/files/2022-11/financial-sustainability-tf-progress-report-nov-2022.pdf
Milleville K., Chandrasekar K.K.T., Van de Weghe N. & Verstockt S. 2023. Evaluating Segmentation Approaches on Digitized Herbarium Specimens. In: International Symposium on Visual Computing: 65–78. https://doi.org/10.1007/978-3-031-47966-3_6
Milleville K., Thirukokaranam Chandrasekar K.K. & Verstockt S. 2023. Automatic extraction of specimens from multi-specimen herbaria. ACM Journal on Computing and Cultural Heritage 16 (1): 1–15. https://doi.org/10.1145/3575862
Milleville, K. 2023. Unlocking the potential of digital archives via artificial intelligence. PhD Thesis, Ghent University. http://hdl.handle.net/1854/LU-01HJ8D40DJRSDQ2VNY1AP1R7Z9
Nicolson N., Trekels M., Groom Q.J., Knapp S. & Paton A.J. 2023. Global access to nomenclatural botanical resources: Evaluating open access availability. Plants, People, Planet 5 (6): 899–907. https://doi.org/10.1002/ppp3.10438
Tack W., Engledow H., Sosef M. 2022. Making the most out of your collection data to assess the extinction risk of endemic plant species. SPNHC conference, Edinburgh, Scotland, UK. https://doi.org/10.5281/zenodo.6593592
Thirukokaranam Chandrasekar K.K. & Verstockt S. 2020. Page boundary extraction of bound historical herbaria. In: 12th International Conference on Agents and Artificial Intelligence (ICAART): 476–483. https://doi.org/10.5220/0009154104760483
DiSSCo Flanders: A regional natural science collections management infrastructure in an international context
Trekels M., Beirinckx L., Claerhout T., Dugardin C., Leliaert F., Pereboom Z., Slos D., Van Baelen A., Vandepitte L., Veltjen E., et al. 2022. DiSSCo Flanders: A regional natural science collections management infrastructure in an international context. Biodiversity Information Science and Standards 6: e94350. https://doi.org/10.3897/biss.6.94350
Trekels M. 2022. DiSSCo Flanders - towards a collection management infrastructure for Flanders. Empowering Biodiversity Research II, AfricaMuseum, Belgium. https://doi.org/10.5281/zenodo.6606798
GBIF hosted portals for DiSSCo nodes, and university collections use cases
Trekels M. 2024. GBIF hosted portals for DiSSCo nodes, and university collections use cases. Empowering Biodiversity Research III conference, Naturalis, Netherlands, March 25-26th 2024.
Van Baelen A., Poot N., Beirinckx L., Bogaerts A., Bellefroid E., Claerhout T., De Smedt S., Dugardin C., Engledow H., Leliaert F., et al. 2022. DiSSCo-Flanders WP2-task 2.1, Detailed inventory of the collections: Report. https://doi.org/10.5281/zenodo.6511351
Unlocking KU Leuven’s natural science collections
Van Baelen A., Poot N. & Goossens E. Unlocking KU Leuven’s natural science collections. Proceedings of KU Leuven Open Science Day 2024 (accepted).
Mobilizing KU Leuven’s natural science collections as part of DiSSCo Flanders
Van Baelen A., Poot N. & Goossens E. Mobilizing KU Leuven’s natural science collections as part of DiSSCo Flanders. Abstract submitted to the 2024 Joint Annual Meeting of ICOM-UMAC and UNIVERSEUM “Shaping Transformation. University Collections in a Changing World” in Dresden (Germany), 24/09/2024 – 29/09/2024 (accepted).
Woodburn M, Droege G, Grant S, Groom Q, Jones J, Trekels M, Vincent S, Webbink K (2021) A Data Standard for Dynamic Collection Descriptions. Biodiversity Information Science and Standards 5: e73902. https://doi.org/10.3897/biss.5.73902
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